NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10000439

Scaffold Ga0211666_10000439


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10000439 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30728
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011860Metagenome / Metatranscriptome286Y
F015999Metagenome / Metatranscriptome250Y
F085545Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211666_100004395F085545AGAAGGMDSPSDLKVLKDILNEWEISLPEFQEQVITEQEKKEISVQDIEEILNQIKDDQKALDKIYKFIINRPGEKGFFGVATDSNVTDKTVDTSNAPQVIFDLLSNSGDLKKYIDLEKPGYSEIGKEGNFLDFFEKKSGMSRETLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMASAGAGDLDWSGKSLEVKGSNARLGGRDRKFEGFERTALGQLATKYDKSDEKLTTLITNLADEDGIDNKELLDAVIDFEEKAHPKGDAKKYFTENILGNPIELRKSFTKNLIKHYSTSKNIDHFIWWNSESRFGKYISFTPEEADGLVDKGDLRTNNMFVYQLDPSISKP
Ga0211666_100004396F015999N/AMSLNSFFDSIDTDAQFDVWKKTITQKLVHLKNIIPIENRNELNYVGETIEFINSLNLLSSDFLAHHPNMDNKKTLIKRLKTCNSFHKKFGNR
Ga0211666_100004397F011860N/AMAYKRQLQIALDRLDQGLARVHSMVKRGKNADAVYFMENNLKELYEELENIINITPDNDESRVGFLGRRR
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