NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10000140

Scaffold Ga0211666_10000140


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10000140 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56570
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (17.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069043Metagenome / Metatranscriptome124N
F076078Metagenome / Metatranscriptome118N
F081338Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211666_1000014067F069043N/AMKKSYKISITNYNKLGMPVSGVSRVISSLTFSKIRKFQNAYPGREDLHRKLDIKEI
Ga0211666_1000014085F076078N/AMRLKFETLLEVQDYYGSSDFQVEARYDKFDGEEYIMFRFGYWNELYYEDKFYAIFEKLGYKVEKQEIEDEDTGWNYWYNIKNK
Ga0211666_1000014089F081338N/AMKTKEEIAILWIIVGLVVIPLCILYPPIIMFGIFMYAIISLYKHYSNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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