NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211680_10140574

Scaffold Ga0211680_10140574


Overview

Basic Information
Taxon OID3300020389 Open in IMG/M
Scaffold IDGa0211680_10140574 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000107Metagenome / Metatranscriptome2222Y
F006126Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0211680_101405741F000107N/AMNNTEVVNNTSKYIVKTTGIGSETNQELVDAEKLTEGTDGSKVSLIECYYLIEGTGTLTISAASETESQGAGKTVAKPLKLTGKGKYGLRPNQLKYGNDKIIKLT
Ga0211680_101405743F006126N/ARFAGPQSSAEFKKLSPKMKAAVLDIYSMISKTSDPIISKIDGIIKVASKKHGVSTYDIEDYFDNELIK

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