NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211680_10086676

Scaffold Ga0211680_10086676


Overview

Basic Information
Taxon OID3300020389 Open in IMG/M
Scaffold IDGa0211680_10086676 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1329
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004768Metagenome / Metatranscriptome424Y
F008561Metagenome / Metatranscriptome331Y
F015491Metagenome254Y
F024883Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0211680_100866761F024883GAGMKLKKRKTSKVWKEVFDTIEAFKDNPDYAPDPDHVQIYITTKDGGIVELHIGYDGEQKIQKTFDSFDSEDDLEEQRIIDKMEDPEG
Ga0211680_100866763F004768GAGGMKKATIEILEEGETIFGSPTNGEFFVRKYEDGEEMSGGFFKTMAEAETCVREYQQLNG
Ga0211680_100866765F015491GAGGVKKTKRQRMVKVPAHPQVTPRKWSKKTSRIFDKQFGRFLYDELYVPTKKAWGEEIKSYERDMFGDSK
Ga0211680_100866766F008561AGGAMKFDELIEHYERAIGFESTVKGVPMSEENLELCRKFVTDIHGCPRQDVRVMYRGPRTSTGNGTLRKDARSFDVYHTPRYS

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