| Basic Information | |
|---|---|
| Taxon OID | 3300020389 Open in IMG/M |
| Scaffold ID | Ga0211680_10006507 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6830 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_085 | |||||||
| Coordinates | Lat. (o) | -61.9898 | Long. (o) | -49.3613 | Alt. (m) | Depth (m) | 790 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000423 | Metagenome / Metatranscriptome | 1156 | Y |
| F032038 | Metagenome | 181 | Y |
| F085809 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211680_100065071 | F000423 | GAG | MSNELKQSIFYIKYYATKHKCIIERKATLDDECYEGVHKKHGYAYKRYVDLDAMQEIDNGKTQYRTASVKWTISNERTLS |
| Ga0211680_100065072 | F032038 | N/A | MFNNQTKEDKMSEQKSIWLVIEKYVYTNSSSTHSVKKTAYSIEEALEFKSALEKLNEQKDVSYFLASDVDTVMNNVISAHNQSVKDGSYYKNNPEIKKEVA |
| Ga0211680_100065077 | F085809 | N/A | MVISWNTGAAAMRFRHNLKLKKKNKQKNKSSSSQAGGPAHKESGFKPSSIKRVGPPDIY |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |