NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211678_10063610

Scaffold Ga0211678_10063610


Overview

Basic Information
Taxon OID3300020388 Open in IMG/M
Scaffold IDGa0211678_10063610 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.8785Long. (o)-73.0369Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F008022Metagenome340Y
F022645Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0211678_100636101F022645N/AMKDTNEIEKQLQRKADKYIEQKAKEMFEIHREIAMYLGGKLPNYIDYITDFSDYSKDLVANRGKYFTSSSPSSMELKFQKDLAKNYKHKLVAKYTKELIMKLDIFE
Ga0211678_100636102F004523GGAMSTEIRSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLDPKPLRFATYSTGYVRNISESNSSCYQINKTKKRPAGTDGYHYETVERIMIPHWEDRLIYLAKFIIKNYYQKPTYLISDYTMDIIKSQYTQAVKYRNLTECDKIQADVNATHSLPFAVDVNVDDIKVIINGHRYNLS
Ga0211678_100636104F008022N/AMTKNELEIKLETLQKLLEEQNTSANAYRDQIQELQKQLKDINKPKLTPLQFDELHEAIEQAVGSFDFDACDNYETDFHIDYDNRIAIESMSFHNADELVRIINSNISELFAEADAPEDDNQLNQD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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