NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10016557

Scaffold Ga0211677_10016557


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10016557 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3795
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019027Metagenome232Y
F029154Metagenome / Metatranscriptome189N
F080516Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211677_100165573F080516AGGMSLERIEELGQILSKLDLTIAHMLSCKITPDDFPDLNDALTMLEEARGMLRKAYQNVRTEYDANL
Ga0211677_100165574F029154N/AMELQKIHGLITNITQHYSAFAVNTEGQNTFITNNLARFLQLSVGDQVLMEVVPNHPDKAQTIPFRAVGCVKLKESLPEESPEQPEHGVLTEIIERQKQTPQQIAEDLKAVLKAADTYLITSEVIAAYREDNPEHAATTDKDINNNLARMHGKGKIAKAEVWGSPEQSKCSFNLWAHNVSRFTL
Ga0211677_100165579F019027GGAGMSGATAQDFAKWEAHAKSVDYHALVFIIQDCRNAREAMKGWNPVKENFYADQGMTYSDELRRRIK
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