| Basic Information | |
|---|---|
| Taxon OID | 3300020385 Open in IMG/M |
| Scaffold ID | Ga0211677_10012920 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4455 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_093 | |||||||
| Coordinates | Lat. (o) | -33.832 | Long. (o) | -73.0366 | Alt. (m) | Depth (m) | 35 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014147 | Metagenome / Metatranscriptome | 265 | N |
| F051922 | Metagenome / Metatranscriptome | 143 | N |
| F065800 | Metagenome / Metatranscriptome | 127 | N |
| F070126 | Metagenome / Metatranscriptome | 123 | N |
| F080086 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211677_1001292010 | F080086 | N/A | MTNITAMEVSIEALANECAKHDFAFMENPWRHRHWSNEYDRRARIFTMLERLGHSSKAIEVYNTYAPAFAKRPLRSKYY |
| Ga0211677_1001292012 | F070126 | N/A | MRIYQLYTYCREVIDKYPALRDDVMRHFALAEMECEDDASSEEHEVELSLTDIDDLVADYEMQMGLQK |
| Ga0211677_100129206 | F065800 | N/A | METKFIPTDPEELTGFDSILKEFNTINDSAYVFNSHYSSNYDVYVGEESTADGYSIWVINVDGEGPILGENVYYYQPSAYDIFNHLGGGWRDDLVVYTEIELHDIEEYMIGELCTNYENYLNELEDAK |
| Ga0211677_100129207 | F051922 | N/A | MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPIDTNTMMRGDSNLIQPQNEVI |
| Ga0211677_100129208 | F014147 | N/A | MTTIKNTFEQQLHEKFGVNVMSMEGIYSAILVDGTHGTDYVSYHDTSPGWVFGVHPKLQAFIDAHGWECEWRNSEVLDLHPGHDWTSDFSEAQLVSHWNAMCDYITAPQDHVYANDDEAFEMLQLTIRQTVAANKHGRYDFDDKWLTLDGYGNPMSFNDLTQYIDVPELEEYLIAHALI |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |