| Basic Information | |
|---|---|
| Taxon OID | 3300020385 Open in IMG/M |
| Scaffold ID | Ga0211677_10010049 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5242 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (35.29%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_093 | |||||||
| Coordinates | Lat. (o) | -33.832 | Long. (o) | -73.0366 | Alt. (m) | Depth (m) | 35 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019754 | Metagenome | 228 | Y |
| F020110 | Metagenome | 226 | N |
| F022313 | Metagenome | 215 | Y |
| F023484 | Metagenome | 210 | N |
| F026870 | Metagenome / Metatranscriptome | 196 | N |
| F075429 | Metagenome | 119 | N |
| F098218 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211677_100100491 | F026870 | N/A | QFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLNRMVTGDDPFSEG |
| Ga0211677_1001004910 | F020110 | N/A | MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIELSDDGPSLEEASEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSASPFA |
| Ga0211677_1001004913 | F019754 | AGG | MNNSDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAELNPNLK |
| Ga0211677_100100493 | F075429 | GAG | MADTTELPETVTVFLEDGSVAVTVGHLTGWVSSAHLVEPKANQLMRAWLEQKSKALLNENYDGAA |
| Ga0211677_100100496 | F098218 | GGAGG | MTSFSSWSKRPEEIRAAAKTRAIAALHKKHSKGLTALERAYLHALKTGRLDLDD |
| Ga0211677_100100498 | F022313 | N/A | MTYHYQPQQEYESTKLERILQELQAIIDRENKRHMMDEQLSHSMRNLLEDEIIPMLEAEVNYDPTPQTSYDFFHQ |
| Ga0211677_100100499 | F023484 | N/A | MNINTKAGELLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCNPDQVLDADQVAKCKNFIRNHS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |