NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10001258

Scaffold Ga0211677_10001258


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10001258 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20848
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (60.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047767Metagenome / Metatranscriptome149N
F056968Metagenome137N
F071407Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211677_1000125815F071407AGGAGGMAIELKKVRNAETLALGFNHEAEIDLSTLGTTAGSATAVDIQVGEAAMAGGVYAAAIIVDELVVGTSITDATIAIGDDGDADGFVDEVDVFNDSGNLGKIFTNTGALLDDGLHLVSAVDLTYNFTGEGPDVATAGKIRLLMDYHPTAGELYGA
Ga0211677_1000125820F047767N/AMNQLVTNLYPRPNSTIAGENLSCATSGSGVSFAAFDDDTKYVMIDVQDNNVIVTFDGSAPTASNGHLLLKEKGLITLSFQAAKAAKFLGVSGAAIVHGSQFV
Ga0211677_100012587F056968AGGAMNKNMQLVEKSLDTIVPEWETVMVASITDNGFEYDIFNKVDSEHFQENLAVLLALVAKKSQQELQNIDWIDD
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