| Basic Information | |
|---|---|
| Taxon OID | 3300020385 Open in IMG/M |
| Scaffold ID | Ga0211677_10000603 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32615 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (62.22%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_093 | |||||||
| Coordinates | Lat. (o) | -33.832 | Long. (o) | -73.0366 | Alt. (m) | Depth (m) | 35 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001582 | Metagenome / Metatranscriptome | 668 | Y |
| F002716 | Metagenome / Metatranscriptome | 535 | Y |
| F004956 | Metagenome / Metatranscriptome | 417 | Y |
| F008346 | Metagenome | 335 | Y |
| F008595 | Metagenome / Metatranscriptome | 331 | Y |
| F028655 | Metagenome / Metatranscriptome | 191 | N |
| F101490 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211677_1000060314 | F028655 | N/A | MKIIDKAKAHFDSLEIKEIEIPEWSEGDEVLKVYAKPLTLAEMSKLQRYAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHTLMNGVDKDVLARVATEIMSSPSVEEQAKK |
| Ga0211677_1000060316 | F004956 | AGGAG | MKMISPNGNISIDAHPSKVESYLNMGWKEEAAQTIKSSSKKTKNEVKENGDT |
| Ga0211677_1000060318 | F002716 | GAGG | MSEYRLETEEDMSAYLDIEYGHGVSAVYTNSSSTASTINVILNNEYVEQEEGIGVEALKPIAYCRTVDVPSIAFGNTLNVSAIKDVDGNILKAAQNYTVVNIQSDRTGFSALMLEKI |
| Ga0211677_1000060319 | F001582 | AGAAG | MPLESAADFNSYVDINTGHGVTATFFEVQNSLWDQRLGLIDTWFDIDSGNSTNINIIIDQEYFNIEGGTVPVAGYQPRAIVKSSDVPYISQQDRLVVNAITTNKGSVLKPETTFFVRTVEPDNTGLVSLVLEEQ |
| Ga0211677_1000060330 | F008346 | AGGAG | MPIKLKASQKIRDRATGKTTTEHYYLKSMTIKDLNDYIESSTAKKKVIQKCRNELTRRSKCNLI |
| Ga0211677_1000060332 | F101490 | N/A | MIPMKNYLQETIEKQLKDFRSYETSIEREWGGKKRLFKCVDAQLEIKFCKAQMLFDESLIESPVKKKIEMIEMMYRAYSALVDKAADNGYSKLEDDFRCYKYRDNKIAIVCDTDTQIPRLKELHGTDKDVVLFSVEELFRFMHPDYLSAKETFKKKNLDIMFKRVSFT |
| Ga0211677_100006035 | F008595 | GAGG | MENTETIKPEDQVIITFNEKEYRASDLNEDQMAIAAKLNVVGRKLSRLQEAYDDYVITSEYKNLCIQSFDRAINAEEEEVEEK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |