NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211596_10051602

Scaffold Ga0211596_10051602


Overview

Basic Information
Taxon OID3300020384 Open in IMG/M
Scaffold IDGa0211596_10051602 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000441 (ERX556023-ERR599110)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1380
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2528Long. (o)26.317Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037939Metagenome167Y
F068114Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0211596_100516021F037939AGGAGMTTNNPDRDRERKEKLNMRSLKTLVAEVDFYKAKFRGAMPPSVRNRISRLEDVIEVKGKILKE
Ga0211596_100516025F068114GAGGMVELGTKIIGNFGAMIPLSFGEVVTIDPDDTGLSTLDVKVKWDNGSITWIMKSEINAAVCKLSPIGYYTEEVYYET

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