| Basic Information | |
|---|---|
| Taxon OID | 3300020384 Open in IMG/M |
| Scaffold ID | Ga0211596_10000780 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX556023-ERR599110) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15438 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus' | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_065 | |||||||
| Coordinates | Lat. (o) | -35.2528 | Long. (o) | 26.317 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F057841 | Metagenome / Metatranscriptome | 135 | N |
| F064084 | Metagenome / Metatranscriptome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211596_100007807 | F064084 | N/A | MRPIVNTIVSGGETSSSQQPGVVLGKPNAPKSAVAAKYNNCGKKSVSFAESDELLGGSIIQQGDHHGERRKKRDGGLLLLFSNWRTAYAISLACAALLAMPFAYMAGYESATTSLLHKFGVAPVPSTSVIGEFYHDALTGMFPDGIPQWPLDINLMIITRHQNKEDYQGFHAIKAVFPRAEQTWGVEPTAWPKHIDEAEHAVSNIRNINARNFADVNKIASSKDRYWDERRSAQNLVGVPWIDAIDLREANTGALRSERVGLSHHIGCLFAHMKAWQNMKDLGMNKAWIMEADGLLKMQEYSNIPLWAMTSVAQNLPEDADFVLLHKGMDKFCGTDGSLCAMHSTFEAKNLFDPSDRAMLSFRHWPVEGSEAGLQTYIVSERFVDKMQEFLAAHGSDMIDAFLYGNLCQNEYKSQEDRGKLWAMNYMHQHAQKAPYSSADERGLKILNCYIVAPA |
| Ga0211596_100007809 | F057841 | N/A | MTAHVKSSSYGATKCDSDTDDTIADESLLLPQGTQTPARYCFQCIDDQQHPSIFWDNFSTAMWLITDILWTENNPLAVCIAPFVVVGYVKAFFSFDGDWARYATDLARTVAMCSWILGNTFWLFQELSENKEKTGIDATILFPYDPWVILTLFLITMMIEPGIFFYYRSRGIDWFKLTPILKPIGNMGMMCWAMKDFAWYLAGEEMLKEEYVWIPKVVWAIADVLIMYQLFPMFFQALQAWGIFSCFTEYASYKQREKTFFERFAHVIDELATSSWALSMTLWSFGEIFMPNDTFAQNLTNAPAKGNLRWWCGHVLILGAFPFFVKVTMDVFSQINYVAKKRRRSCPENLEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |