| Basic Information | |
|---|---|
| Taxon OID | 3300020383 Open in IMG/M |
| Scaffold ID | Ga0211646_10181318 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 753 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_109 | |||||||
| Coordinates | Lat. (o) | 2.1008 | Long. (o) | -84.5107 | Alt. (m) | Depth (m) | 380 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013191 | Metagenome / Metatranscriptome | 273 | N |
| F090849 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211646_101813181 | F090849 | AGGA | MAAANKVPENLNYLSNISFRLTIEDAPNITWFCQAASVPGVSIEGIDVFTP |
| Ga0211646_101813182 | F013191 | N/A | FIYRKFIPNHLVCQDIDAQLELITNDLTKKYKCYFRGFDLIPSMHYDMLKQTTDKRYKIGENQPKTDNFIQFAYEGVMYFIWIDSSDPTENIAWWSDTTFEEWVTDTVALRLAAQQNPSETFFYCVGFDYYHNQTKDGIFLGTSITDFHDEKQDSWVGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |