Scaffold Ga0211646_10004405

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211646_10004405

Scaffold Ga0211646_10004405

Overview

Basic Information
Taxon OID	3300020383 Open in IMG/M
Scaffold ID	Ga0211646_10004405 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6588
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.1008	Long. (^o)	-84.5107	Alt. (m)		Depth (m)	380
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053308	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211646_100044056	F053308	N/A	MNEIYKLTIFGTGFEICVGEIEKSKFEYWKDKEITSEIDDNKKKDKFNLFESYWTDLNDIYHDNGPGMLENTKLEIKQDDKIILESYLGKDDLINSKINFKKHQVKIESDYYFLGYQHDKGTFYKTEFEAQSFDINKLLISYETIADFSIIIDIEYDGESLDKGDYSTTTKEISLNVNQK

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