NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211686_10015254

Scaffold Ga0211686_10015254


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10015254 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3235
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019027Metagenome232Y
F029154Metagenome / Metatranscriptome189N
F080516Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100152544F080516N/AMSLERIEELGQILSKLDLTIQHMLSCKITPDDFPDLNDALKMLEEARGMLRETYQNVRTDYDRN
Ga0211686_100152545F029154AGGMELKKIHGLITNITQHYSAFAVNTEGQNTFITNNLARFLQLTVGDQVLMDVVPNHPDKAETIPYRAVGCVKLKESLPEEEPQDEPEPDNGVLDQLLNEWTEQKQSPQEIMGTIKFLLKAADTYLITSEVIAAYREEHPDQTDVSNKDINNACHRLFKQSKIARAEVWAKPDQSKCSYNLWAFDASRFTL
Ga0211686_100152548F019027GGAGGMSGATAAEFKKWEDHAKSVDYHALVYIIQDCRNARQAMKGWNPVKENYYADQGMTYSDELRRRI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.