| Basic Information | |
|---|---|
| Taxon OID | 3300020382 Open in IMG/M |
| Scaffold ID | Ga0211686_10011623 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3821 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (21.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_084 | |||||||
| Coordinates | Lat. (o) | -60.3606 | Long. (o) | -60.5096 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033962 | Metagenome / Metatranscriptome | 176 | N |
| F066136 | Metagenome / Metatranscriptome | 127 | N |
| F090610 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211686_100116231 | F066136 | N/A | MNKIKTLILLTLLSSCYVEDILEQGDTFVIPENSCDCVYGDEYTGEWFTMKLRPGLKSFGWLSYNRKDYCEIVMKGYLINCK |
| Ga0211686_1001162311 | F033962 | N/A | MNMTELKQYMIDNKRIKVAQWNKDRQGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNHWNFNDTKNRELFTK |
| Ga0211686_100116239 | F090610 | AGG | MNEPWRLYLLDNKSLTEISKMLNITKNKLINEYGLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |