NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211686_10004423

Scaffold Ga0211686_10004423


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10004423 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6995
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010792Metagenome299N
F022980Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100044236F022980N/AMFLTEVRRHNDQELYAWAISLLTDLKYAGSTFTAHYIGYGQWTFGDENEYKDNIINLKNLISKSGKTIIFCFDFTLHDNRKEIIQIMEENKDAELLWIGAEKDPFDHPRIDCVFWPADMLLQNKEYRKFDDVEKEPSEQRHWISTSLGIRPHRIYAASLLKGLALDQTGDLRIKTVSRSGKKSPLVSEALAQGNGHAPDGIPTLLLYVENKWKLSKEIKDISEESNKGYEKLIQKKWWGSSLFLFSHYMTLGFNQNNNAANFDKNLRHLYKDKTLEVVNETSHGYDPAFVTEKFINAVIGLNLVIMNGPAGTVRLLEDLGWNSCRHVINHDYDDIKNPIVRCEEAIRLNSKLFSDTVYCNKIWKDNHNILLSNSDWARNYLYKDVLKQCEEQVKNSHKT
Ga0211686_100044239F010792N/AMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLRDLNNLADFIMQHRNSMRFRMQDQKAIFYTNEGMSKDLIGSFTNYHVKTEIVDPKFGLLEKDSVGCDRLPYGKYKYQVHLRKDVHKHVNETEREALRAFIERNIDNCLITNKFVLDFLEDRSPHCYHGYFYVQDEKFLTPIYMIAQKGIDKVIKFVEVKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.