NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211527_10205800

Scaffold Ga0211527_10205800


Overview

Basic Information
Taxon OID3300020378 Open in IMG/M
Scaffold IDGa0211527_10205800 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0211527_102058001F015742N/AMDSRKAYEMIKEEIVDRESAYLCTELERALDRIITYTDPLDDAMFNKIKAHAI
Ga0211527_102058003F008424N/ARLLYLTLIAGVCFFTGVFYTYYKIDQRLWNEDIVKARDIITRYENYPTKRNYKQDDLKRIIYGTN

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