| Basic Information | |
|---|---|
| Taxon OID | 3300020377 Open in IMG/M |
| Scaffold ID | Ga0211647_10015836 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3111 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_109 | |||||||
| Coordinates | Lat. (o) | 2.0663 | Long. (o) | -84.5304 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008210 | Metagenome / Metatranscriptome | 337 | Y |
| F066837 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211647_100158362 | F066837 | GGAG | MSEQDRTKEVNDLVSDILAGANTDAQEKFNSQMTSRANEVIDDNKAGIATDVFNKHVVDPDMEPQGVALDDALVDIDQTTGRPVEEPEQGETNEDI |
| Ga0211647_100158364 | F008210 | AGGA | MAVTVNALKLTQVQGVISVRGTAATGTIALASTLKKSTETQSSPAVNIKGLHWTLSSGASAKVQRNSVVLYELMENGSLDMYGYADNSENTSDIEVVIAGGAGGTVIVDCAKISGYGSQQHQDAPLDTNDSGNVYNGGSLG |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |