| Basic Information | |
|---|---|
| Taxon OID | 3300020376 Open in IMG/M |
| Scaffold ID | Ga0211682_10015303 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3137 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_085 | |||||||
| Coordinates | Lat. (o) | -62.2658 | Long. (o) | -49.1658 | Alt. (m) | Depth (m) | 90 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037983 | Metagenome | 167 | N |
| F064200 | Metagenome | 129 | N |
| F069447 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211682_100153032 | F069447 | GGAG | MKELYLKICKKLKIGFGPNHVVANNGVTALSRWGFWSPFLTVLVSRVHPIDHDKMFNNTRVDARVIYHSHETNFVSFIVKGKYTEERNVDGKIVVKERKWFNYVKRDTFHRIKCDDYAWSVQAGFTRDEKVKVKINNKIYPHRRLFTMGGRSDGTLG |
| Ga0211682_100153033 | F064200 | GAGG | MIYLHRVIVEDSEATWKIYWFNPGILSHRKYVKKIQEEIYKVFPNETYSWADPVHQCFGYHLKDNIIVTNVCGSDDFLLHKNKRYVGLKDQNEIYYDKDFICFYYDLDNAKKWSEVYYKKENNPEVVSKEKLGSGLNIEWISEYYNDEFEKTGQNLFITGKCEDIYNWADKQNNKIPKPFKNLIDAEGSSDGVDHINTKNAFKFEYDNDGNLVKLKFFGCVLRTKMKVKGEFSHIELSSGYISSINNSEQTEIVEINYDGSGNRVPSKVIKKVDDYIFFPKARENGGYERVILKDM |
| Ga0211682_100153035 | F037983 | N/A | MFLHRVLIEDCKVVTRVWWFDPTKLSEVKFTRKIHKEINKVFPDETYTYPVNHIYGMNHDDNCIVFHMCSPERDEMKTLERKCELKAQNDVLLGKAYVRYVYDMENKSKYMEVVYRDMENFGEENWPQSYKTGVPTTVKICTVSEFFDEDFNKIYESLLIHGYNNVQAVYDYADTLNKDLPKPIPVDKKVHKDDLFKFIFDMEGNLVKLQLFAHVGRVAVRSKGNTEIEYKADYADCINNLKETEIVIPEYDINGNPVRSSKPKDNDGYILFPKARGKEYEKVNFKDY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |