NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10007423

Scaffold Ga0211656_10007423


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10007423 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4416
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023453Metagenome / Metatranscriptome210Y
F038861Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0211656_100074233F038861N/AMSSNDWIKYETPHDGVGMFVSVFIDEDKGLVKRTFDGDHCGEGISKRTNKADILFKNEVYWITHPELSGSKFLPELIDIDEESKTIIQRYYGPNLLDYYPDKFPISNLSEQILEMYRFFHEVGVNKLNGALSNMSLNGDQVIAFDFKWARPAPKANAKEIKAFRKWLTKLDPDLVEELVKIKSSTPRNI
Ga0211656_100074235F023453GGAMRIGEITQSNTLYELEKWAKRNVPLLEDGSMDAERLSQTLLQKAINKFKKQPEPSEEKTQDMEQYMSKLEDKLGGEEKIKTTTLKKFFGFFRAHPRMIGLGVMILMLLSPMLPSIAIIGLSLEKILSMVLAGLYAMDIASPGVKTSIEL
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