NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10001892

Scaffold Ga0211656_10001892


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10001892 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9948
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F003122Metagenome / Metatranscriptome506Y
F011704Metagenome / Metatranscriptome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0211656_100018921F000615N/ARPVNIMCRIRLFYECSDGTMGFAEHLMPYSEDIAGFIKHWKTGGRMVITEHFDLV
Ga0211656_1000189217F011704N/AMNIKNFQELIDISDEVDVAEEYLIRKFKDGGNYIIIDNYGDFLILDRDNVDSVFSTIWSDLYGTINEEIPYVLN
Ga0211656_1000189230F003122GGAGMIVSLILGLVVFAVICLWVLIEERKSPKFLVWFIPLFLVLVSSTYVTYTSILGYPKVEKPKEGLYLKHYIDEPNWIYLWVVYKEKIPISYQLVYSRETHKALEGVKEKSEQEGKFMVLREKEEGVGNKEGKKEQDGGITIGGDISFYEWDYKSNSQEKNPEENR
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