NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211531_1020159

Scaffold Ga0211531_1020159


Overview

Basic Information
Taxon OID3300020361 Open in IMG/M
Scaffold IDGa0211531_1020159 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)18.9918Long. (o)64.5757Alt. (m)Depth (m)340
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010475Metagenome303Y
F027653Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0211531_10201592F027653GGAMIKRISWLRDKEVYPTAPNIDMFVNWLMDIKDHPNLKKFNAYLWGGFITSPQDTEDIDVLITKRDGQHATLKELEELMVDMFDSAYDTHGFFLDTCYMRIPQWIGDYPRNKEFLKSVERKQLFITITKNEDKGIVCKYKRYGKLNCCYMSSFGPLSGWDKEDSALINRWVDLDANYAKMVDLRRIIKYYDNNKERNIGDFLNEFQEYSGY
Ga0211531_10201593F010475AGGAGMISFIIPFSTIEKDKFLNLNEKEDLWEENNTANIVYSTIKTIKNINSLECDKEILLMDNSHTWPEVNLPNVRVIKGWQALPLKELEKIPEYMNHRDIQASLDNLGCLTMWVSMAFHLGTQEAKGEYVVLQHNDTFYHQDCIDEMIQQMEEEELEYISVDNKKIWISTYLLNKEFLDKYIKEFSQQPVSIRPDHGGYIKTKKVGFADAYFFLCKRKFFDNYNIDWYYGDTNHGATIYCLYNELEYLHLGPYYDNPNWETEDTLHTYYYKDEPFLTHLKGGFSENKMSSEDFEEEFNEYLKELTNAK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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