NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211613_1000052

Scaffold Ga0211613_1000052


Overview

Basic Information
Taxon OID3300020353 Open in IMG/M
Scaffold IDGa0211613_1000052 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47934
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (73.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.896Long. (o)-140.2861Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002030Metagenome601Y
F003373Metagenome / Metatranscriptome491Y
F072735Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211613_100005212F003373AGGMEKLDKDNLKVIRLDNGEIIFSKVVVNDRSKDNGYLELHWPMKVMMKFNDDKRESQMALLKWLPFTDTTFVPLAARCIMSVSELGEDYQEFYINSVKEDMGHNKDQEMNKMTKILEDFEPEGLMN
Ga0211613_10000523F002030GGGGGMIGILVFGLVVLSTVCLWLLIEQRKSWKFLIWFIPILLVLSASTYVTYTSILGFPKVGIPQKGMYLKHFVDEPRWIYLWVLGKDKIPMSYQIVYSKETHNSLEGVKGKSEEGAFMVLGEDSDLEVDEGDGKEQNTRRGFTIGGDIGFYEWDFETSLTPKDTQQ
Ga0211613_100005232F072735GGAMWFRGFLIGCFICVGTVCVAQSPSEIQPEHQEIIHNRYQPHKLNKETYKTEDVLLLFKSCYETLYFLGNTKYKRSKKELKEEEVSRQCFCICDKIRSIYKPEEFLDRPPIDIHNIIKPLTTECMTEKGQIWHDEEK
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