NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1006948

Scaffold Ga0211504_1006948


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1006948 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3704
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002047Metagenome / Metatranscriptome599Y
F055736Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10069481F055736N/AMKNKPSWIGQYAAFNDALKYMYARSTGEEKSIYTPWPKFNDAATDGIEWNTLTVIGGRPGSGKTLIKDQ
Ga0211504_10069482F002047N/AMKQGVSLPNVKSEDKEKLIEKGFLTKEENQYKMTAEAKAFCARLDNYFVKAKKKTDIQLMGKDFNDKIHTYREIFPARKLPSGKPARNNIKALGENFRWFFETYDYGWDEIIKATKMYVNEYRDAEYMYMQTSQYFISKQDKHRVKHSTLADYCDMIIDGVETEKEHFKENVV
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