NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1001063

Scaffold Ga0211504_1001063


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1001063 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13010
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (53.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006373Metagenome375Y
F009890Metagenome / Metatranscriptome311Y
F015791Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100106319F015791N/AMTGMKKISIILLLVILSGCMKTTCVTDTECTKKLDWNNKGFTLFRTVITNGTNLGK
Ga0211504_100106328F009890N/AMSNHLRNLRALFESAKSFEVSRKVDTYEYESLEKMILDDTIKYNEILELFTDKIYREWFYQRNFRGKEFNVTRYSET
Ga0211504_10010639F006373N/AMKKLLILICLLWNTTSYADMEKYDLFGMTMPMMCGLPATVDKYIKDKGFTAINISFGKEGAKEDGEIVFAITYYINDKRQTLAVAEAPTDPYKCMIFQTFDMIMNKNLLSGTDT
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