NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211690_1007901

Scaffold Ga0211690_1007901


Overview

Basic Information
Taxon OID3300020335 Open in IMG/M
Scaffold IDGa0211690_1007901 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3193
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y
F076593Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0211690_100790110F076593N/AMALTEHQKNELDAVADSVAHYIEDHLRETVSWQMPDALVDDLQEVQFLNAMDYAYNKVLQLITEK
Ga0211690_100790111F007892N/AMGRLIEISPQQDVVNKINAKADFTHNINNTRLERYTVSTQNLLKTANPSLFSKNTWQMVDDAFNSDQELLGGWLSEDDIYFLDYGLSVSNLKEAMKIAKFNKQLAIYDNVSQKVITVNQ
Ga0211690_10079014F051139N/AMQTAKLKLPVKQFHKLHDFLGEILDHEAETNDFNMENSDIELIEDIRTELFNQIPDEKPIETTYAFTAVAELTSITPIKLYKTDRVKSGGFLITNDRGSQIFCIDKGCSHLSSDQSKNWKFITITND
Ga0211690_10079015F072257N/AMQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYEFFKESWCVSDQGMTDFYKQMLYTFAYEQRNVPEHAFINSCMWAYHSAISSRDEYCVNSRPIPCQKQCAIYKTNTTVSR
Ga0211690_10079016F005129N/AMKYKVKIAEKSTSINLAHHSYIDLGMFTVNARTDSFLYPAVKTDWGCDINETELDFEINGKRCRYDGFKELYEKLHGKGAFRDLTTQLYSQIEDAVAKQIIKEYPGTNVIY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.