NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211690_1007372

Scaffold Ga0211690_1007372


Overview

Basic Information
Taxon OID3300020335 Open in IMG/M
Scaffold IDGa0211690_1007372 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3350
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045129Metagenome / Metatranscriptome153Y
F049660Metagenome / Metatranscriptome146Y
F095485Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211690_10073721F049660N/AMKAYSGKPRGRVNQGGATHKKDADKLNKNFGKNYNSIDFEMGEHLNEANYKDKSRPIGTLVVGSQRVDLTWSECNKIFTTLLDAQQIHRRKIQLGMFD
Ga0211690_10073722F095485N/AMKASDLFKELGMGDEEMKEARNWVNYKHFSETIPDILSLNEYIDTVYKHAVTIDAKPHQWFSERYMTERYLQSDVSIGSDYVTNLEKRIEMILGKPSTQPDLKTQLHIHKFLELILTVVRKSKLALPKETLLFLNQIYKGNINT
Ga0211690_10073723F045129N/AMSIHYIEEPYRQKIVDILSTDDTDEQKYMNLKLYLVGESYFKHFTSEPAWLTRDIIRDFN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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