NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211572_1041410

Scaffold Ga0211572_1041410


Overview

Basic Information
Taxon OID3300020330 Open in IMG/M
Scaffold IDGa0211572_1041410 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001964 (ERX556097-ERR599147)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1208
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2016Long. (o)-116.696Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F066274Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211572_10414104F066274N/AMILELTSEEIGWVKYALMRSSATLNGRDKEMTLKEERLLERIVKKIEKQEK
Ga0211572_10414106F013467N/ARVTMTVGLLKNWVWCEDCLEWKDAGDEVSFVNIEEDSFGKDLMTFECDKCENTNKNNIISSPTKPKGA

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