NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211688_1001604

Scaffold Ga0211688_1001604


Overview

Basic Information
Taxon OID3300020317 Open in IMG/M
Scaffold IDGa0211688_1001604 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7329
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008563Metagenome / Metatranscriptome331Y
F009608Metagenome / Metatranscriptome315Y
F014036Metagenome / Metatranscriptome266Y
F026041Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0211688_100160410F008563N/AMKKKIKLETHMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVTNPYANIKKEEYQITGSRGDKYTVTNRNGQFSCNCPAGKFRGTCKHSTQVQKELSLVE
Ga0211688_100160415F009608N/AMHINRYNMKYIKPLNEARPMFQETPNEFAYLDFKKWAYKNRGKIKKELSGITDGTKLFIALRQVWMNWANKNAKEWSYLHATDVARKDFGRALAIMLKKDDLIIKKQGNKLIDLK
Ga0211688_10016043F026041N/AMIKIVKEKPIKSTTSVEGILVQVTGGQWYGITIFRPARNPWLGRASKSTTTGRMDFAFGSETLQMQFKDKPTFEELKETLINVLNGAEPVKCKINYN
Ga0211688_10016044F014036GGAMEMFACLFIIGLSFLFHLIVYEDDYVKKWYWKVLGGGGILLLVFAAIMGY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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