NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211520_1078051

Scaffold Ga0211520_1078051


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1078051 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)520
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028002Metagenome / Metatranscriptome193Y
F092192Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211520_10780511F092192N/AWTASTLQTAIRDLGATVGVNNKDLRGSVVTETELKLDNS
Ga0211520_10780512F028002AGGAGGMDKIIKEVKKNKKAMIGVAVVVVIFAWMLLSGDTTPVDAQ

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