NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211484_1000637

Scaffold Ga0211484_1000637


Overview

Basic Information
Taxon OID3300020269 Open in IMG/M
Scaffold IDGa0211484_1000637 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10294
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F007002Metagenome360N
F087292Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211484_10006375F004144AGGMRNIFKESKYHLEVETGWTYWFHLKHSLVNSYKLIKISFKSLVHGLFPFIWKSDAPRGVIILYHEIMKIQHIKKLDKLRKYPKNERYISNDTE
Ga0211484_10006376F007002N/AMNDTYLTILNSYGDIVELDYQFDVSSIIYELKSIDKWMDGSNNKKGLTLTGSVDDLELTKRNDCTINDNLKKCPSLIEFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNVVELKAGRAYLLNTKKQHGSFAMVDDIYHILMGIYINPHNFKVVTNLLPNCIDHE
Ga0211484_10006378F087292AGGMNCQHYFKKLNKFSVCAFQAEKGCIEVEPRSESCGIYHYVFYGSAKIGKPFESEFEIVKKGDFFDMKDYLHQPRLYEALEDFYVWGFNTFPNEDWDARLLTDESFTVDKDSVLICLDGRPVVNDISLRRFDYGELSTEKSYDVKLNDGVIALFTRSK
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Institute for Fundamental Biomedical Research
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