NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211537_1004778

Scaffold Ga0211537_1004778


Overview

Basic Information
Taxon OID3300020262 Open in IMG/M
Scaffold IDGa0211537_1004778 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3843
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.735Long. (o)66.3895Alt. (m)Depth (m)270
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F005749Metagenome391Y
F012582Metagenome / Metatranscriptome279Y
F013775Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0211537_100477810F013775AGGAMVEKRQYETVKDFAKDYRTEIIPMLKSKGFTLSINTSKGSYWNDGRMNFQIKKIPSNFYVWTNEYSRYNKTEKSMNLLNTIRDRVRNLLLSTDLDVDLNFDYGKDVRYKPIPEGWDDERN
Ga0211537_10047784F012582N/AMTESQKKLKHLRTTMIQWADENKIQSKKNKQYHVIPQRNGIDWEEDFKFVTKLDGMLSDGLDDKLKKNEMKMCNQLYKYYGSCYDRIRR
Ga0211537_10047785F003091AGGAGMTMLPQKPITKPGEGKQREKQVTRERYLEERYQISVGLKGPKRLEGESFEDFQTRRKAENGLLREYLRGVWVKNEE
Ga0211537_10047788F005749AGGAGMKKSWLLIMSFDEHNGSTNEIKTLYHGKTKQSMVKHMNLLQDMNEHLVLSLIEVDKESTYEDIIKNDESDMFFMDSKSNWNNEKTYEDLKEEVLEEMIMSSLISGEMGYA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.