NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211537_1001550

Scaffold Ga0211537_1001550


Overview

Basic Information
Taxon OID3300020262 Open in IMG/M
Scaffold IDGa0211537_1001550 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8604
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.735Long. (o)66.3895Alt. (m)Depth (m)270
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000107Metagenome / Metatranscriptome2222Y
F001156Metagenome / Metatranscriptome763Y
F002166Metagenome / Metatranscriptome588N

Sequences

Protein IDFamilyRBSSequence
Ga0211537_10015502F001156N/AMPNYNKQILERIVGTKGKGELAEKFKLAFAKKLGIKVEDMKKGIVDKVYNKEKVER
Ga0211537_10015504F000107N/AMTITNTTVVDTTDKAIIKSVGIGSETDQKMIEGGAENLASGNNESLVSLIECYYLIKGTGTLKISADSEASDLSLTGKGKYGLRPDQLKFGNDKQILLTTDSNVESYLLVTEFRRNN
Ga0211537_10015506F002166AGGTGGMLNQLSFQKFKKKLSEQKGDSPRETAEFKKLSPAEKRAVKDIFTMLDNTKGEIITKIDSIIKQVTKKRNVKVSAIEDYFDNEILN
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