NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211529_1005584

Scaffold Ga0211529_1005584


Overview

Basic Information
Taxon OID3300020258 Open in IMG/M
Scaffold IDGa0211529_1005584 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2074
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y
F016667Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0211529_10055841F015742N/AMDSKKAYEQLKEEIVDRESAYLCTELERALDRIITWTDPLDETMFRDIKESAIKLLKEWH
Ga0211529_10055843F008424N/AMEKKINILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEDILKARDIETRYLNYPTKRNYKRDDLERIIYGK
Ga0211529_10055845F016667N/AMKLNKNLKRVLVTVALVSTGFALGTQNGEQKILDRWENRWFESKWYDLQSIEDILYDIDYSIELGE
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