NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1000003

Scaffold Ga0211654_1000003


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1000003 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108601
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (82.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002434Metagenome / Metatranscriptome559Y
F046713Metagenome / Metatranscriptome151N
F061869Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211654_100000341F002434GGAMATDSHDQMIEAFQKYFKWQDRFEYHGSDEAGIKARFWLSEIRKHASQRRLEVQEKRSERKLARKGQVGRPKKVTTNDDVRMDLPKEED
Ga0211654_100000363F046713GAGGMPTVFKQSVVTDIGTTPTDVLQIQEGVKATVVGCNLANNSDYDTVVVDVQVVDENSTVGNYARSVPIPPGSSAKVITQGERLILPATAGLRITSDTESSVDATVSFVEIS
Ga0211654_100000364F061869GGAGGMPNPYYFGQSPDESLGDSPRYFYAIRRNEDGELYLLRSDQLKDKDSIDINLPGPPDETFEDLEPGVDFFDGINVNHIKDKENMYWTQYKWDQRSILYYVDDEGMLVQRINQNYAYPSGTS
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