| Basic Information | |
|---|---|
| Taxon OID | 3300020242 Open in IMG/M |
| Scaffold ID | Ga0211701_1000050 Open in IMG/M |
| Source Dataset Name | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555995-ERR599010) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3792 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_076 | |||||||
| Coordinates | Lat. (o) | -21.0073 | Long. (o) | -35.3344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021559 | Metagenome / Metatranscriptome | 218 | Y |
| F024331 | Metagenome / Metatranscriptome | 206 | Y |
| F030784 | Metagenome / Metatranscriptome | 184 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211701_10000501 | F024331 | GAG | MIDDYYKYEPTKPLYILIKVEVDKEIVYNQEKADTYAINHCNKLEYELVDHYYPDDEQYPYIAK |
| Ga0211701_10000505 | F030784 | AGGAGG | MGFDTYIEDRAMIPVLLGYDWMIWKDTWTDCPYETYMFLKKKVIHNGNAKPLA |
| Ga0211701_10000507 | F021559 | GGAG | MTDHAPLDQPILDILNTYNPLEIKDILIHGAWRKAVYHKDWDSVLSYYQEWQPYIHHYLLDSPEVWDNYALMQKAYTMSTHTATDQKEYIKDVFYLYMDTLASDIGSKWNLHNQSRKQIEDDVLAIELQIRKSQLGVIDGGKA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |