NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194042_1054702

Scaffold Ga0194042_1054702


Overview

Basic Information
Taxon OID3300020229 Open in IMG/M
Scaffold IDGa0194042_1054702 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y

Sequences

Protein IDFamilyRBSSequence
Ga0194042_10547022F001964GGAGMSRNLFAKPLYKVQISGAIGWSDLKERVVRHETVEFASRKDAEKAAKDLNPGEYTQGRIRVVPVELSEDYDVYPTLEKSKP
Ga0194042_10547023F002227AGCAGMKLTIQSKTNAQTIVDLFNAIITGECETQGVKPLSIYDEDRHICSITDADGNQILELIIEREDGDRLCPGTPDLETL

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