NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11294491

Scaffold Ga0211731_11294491


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11294491 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5414
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015601Metagenome / Metatranscriptome253Y
F046374Metagenome / Metatranscriptome151N
F066790Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1129449113F066790N/AMLSNLMQRIQDIFKPYTLDDFMEDAQPVDHKDIQRLEAVWHSYQERKLFNNCY
Ga0211731_1129449119F015601GGAGMAGYTKEFLIDAFMSRYIGCDHLSIEKLERLENMANDLYDRVGRDSFRVYACLDAEAIREYKNKFALN
Ga0211731_112944913F046374GAGMAKTFGNLKSNKLDMLDKLTIGKFAGCRICDIIADDFEYLIWLNKQGFVNFTTPVMTNLLARAGFREAEEYYQNEIVPWKDEDVPF
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