NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11126110

Scaffold Ga0211731_11126110


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11126110 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003182Metagenome / Metatranscriptome502Y
F012454Metagenome280N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_111261103F003182GGAGMHILLFDCSICKKLYGKPKQRHGLKKGSELTEHEWFAQCMGCGTFGIKIVDDKRIVELSQ
Ga0211731_111261104F012454N/ALWIQESDRHDRDIAVLVTGHYPKMHIVGWIPVAIAKKPRYKNTSQNNWTVPQTNLQPIETLQWSNYAHPVV

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