NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10020591

Scaffold Ga0194131_10020591


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10020591 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6400
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058096Metagenome / Metatranscriptome135Y
F082582Metagenome / Metatranscriptome113Y
F091925Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_1002059112F082582N/AMTAVATFPADVMLGMLRKGQTGTQILDILNVLVPEQTELTREQVCEDLGIADCPENDDEIAAYLAAV
Ga0194131_1002059117F058096N/AMNAQMSIDECKVMWVVGALERLATLGLIGPDIPLKLSSNAIEDYLEIDENRELLFESDFEIASIFTALADDECDPEIQDPNDYKPIIDLLIQYKDNRTQIVKYALSHQTV
Ga0194131_100205912F091925N/AMTSISFTSGELLDIISALEEKEDALYLAEDHNLAAYYMNLGVQFQKVYDKLQEFVPENRVANLILAVN
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