| Basic Information | |
|---|---|
| Taxon OID | 3300020193 Open in IMG/M |
| Scaffold ID | Ga0194131_10015605 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8195 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -4.8915 | Long. (o) | 29.586 | Alt. (m) | Depth (m) | 120 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041650 | Metagenome | 159 | N |
| F091376 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194131_100156057 | F091376 | AGGAG | MKYATWTIKRPEGTTPESLIRSRGGQAWGGFMVDGDTVLGYVWNDVDLTGLDAWNFTEKTNTEAMALALDINPECFFADDGQISSPQPDLV |
| Ga0194131_100156058 | F041650 | N/A | MREDIALALAECQMPRTRYQLEHFVVGAHDTPEMRFVQVCRELEALHYTIKEVALQIRKTEYEIEDLKEKGDRISRVEAEIKELGLERTRLVAIGAVREYDTLTEMFDEMPKFTREQIDSSQPDYWQARLSRQANLQIMAGAANWAHLEALDQVGVLRTMIQAEQEKAKEIQQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |