NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10012061

Scaffold Ga0194131_10012061


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10012061 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10162
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.34%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029027Metagenome / Metatranscriptome189Y
F038121Metagenome / Metatranscriptome166N
F045624Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_1001206115F029027N/AMSNPAFEYLRQFKKISNETENLVIKIIRKRYPEISMNELVTIFENGITGEYGKVYSLDPETIIDWVRTFTNKKGQQRSYYDTPLLTADISIYDSRYPDKQDEWNKEVNKGFTAYLNGVSTKEMHPHLYDRLMVDGKIEFEAYLKYYNGSVDLAKQLVLNDYFFEQKRKGFTYIYFIKKANYVR
Ga0194131_1001206117F045624GGAMKDQTEKNDLFNDIINNSFVELSLAYARAYEKNPRNFINCYKKHKGIRMCCNWIVFTYKYIGAFDECKQLGKDFTEWANRQKIKDDQKKPLAELILIFYSIIHK
Ga0194131_1001206124F038121N/AMKYLLISILLFSCNPVKQVLRDKEKLDKVAEYVVENGYCANDTIIQSKSDTLITYDTIYEKGLDIVTNIHKIDTLRIPLTKTLVKTIRITDTIQRVVVDNARIRLLEAKLDAQIKRVGEFKNKAQSRLMWLILLLMAFLLRLLYKPIKKFILWHYSPMLK
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