NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10009319

Scaffold Ga0194131_10009319


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10009319 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12440
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F023324Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_100093191F023324N/AAAIALYLTGVTDLKVLSTAALAGFLGPVLKWLDPSATEFGRGSN
Ga0194131_1000931910F001515GGAMIKKSSFDLDFGYGRKGEQLVEELLTGGRTVEVKRDRKWWITNNIYIETECWYRRSKAWEPSGLSVTEAAYWAFVLEQSTLLIPTHILKKTVKELGRDISCEVPPNKSKGYLITVEDLLTGTRKWKNEKP
Ga0194131_1000931911F001531GGAMEKRKAMNWDSIEDWDYIVVNVSSEYHKKFPMCELEDIKQDLYIWFAEHPNKLEYWESLGKKDAKNLIYRSLRNQALDYCQRWKSKSIGYDISDLYYYTPELVEVLLPTVLMGNFHIAPKLNLSNVSSGPSTPSEGGNIQVMLLEIDSAYWKLSKDNRKIIFLRHAESFDFKEIANLLSLGTEDAARMRHKRAIKRLVNKLGGRKPYPDEDLDKANQEKETEQHQSSE
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