NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10003778

Scaffold Ga0194131_10003778


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10003778 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23470
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001360Metagenome / Metatranscriptome714Y
F015212Metagenome / Metatranscriptome256Y
F021091Metagenome / Metatranscriptome220Y
F025678Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_100037782F015212AGGAGMPTQYPVGLDNFINPTSSDTLNSNTVPHAQQHSNLNDAVEAIQTVLGISPAGSHLTIKDRIIDAETLIINQSVLNGLTDVTINSVSTGQVLRYSGNAWINYDEENLVDGGNF
Ga0194131_1000377824F021091N/AMDDWKNYIDKNGNFQLANFLYKSINELMKHSLDMGTLLSNDSHKLRAYKEQTKKLFKNKWLDVASALEYFDIIEKCECYFGQKEAYCEICKGSRYKISPYLSPDEMREVSTFVNTTHDPEIQIKLQKGLIKLLEEL
Ga0194131_100037786F001360AGGAGMSLAKFRKVGTKTGSGRFVVSAGIAPAAYLLTHPGLPTWYKDSEDDRFEVVITKGTILSVVADSNGDSRVVPANGTSADKAYGDNMPSTWDPMNGATPNYSSGATDTVTVTARSIPIGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGLNADVTVGSVVRSDSMGRPVKAAAGDFFSANAVYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRSGAFSGKLGIRSNLDVTNVVGAFRVNLTL
Ga0194131_100037788F025678GGAGMAFDFVETFMVQLPDFSGVDFNFSESKNLNKGLIIEIAAIHERIDG
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