NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10000584

Scaffold Ga0194131_10000584


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10000584 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62105
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (72.13%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004237Metagenome / Metatranscriptome447Y
F006450Metagenome373Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_1000058410F004237AGGAGMNTTYEVADMMIGVRNMIEASDLRKGDQVLLLADTRSDKTTLEALTAGIRFYGAEPMTLVTEPIARYGKVPKAVLDAMHASDVAIWVWPVFITFTPDHRALGRKREESGTQLHETRMKPYHIYFEGNAGLLARDYAKFPNRVLWKLAEKVREVVANGKVVRIEDDLGSKLTATYDGKKLYGMQFRAGDPPGRCHFPWGRCGVFNGEGNSNGEVYLSCVQGVAGRLAEPMRWKIKDNVITEVDGGGEVGEECRRLFKEVPESNHLIEIMFGYHPKASAEHGVADPMHWELISKMPWVGNGTPRKHSKFRHMDGSVFNGRLYIDDRLVVDKFGMLDRALLHHPQVLEVAAEFGDPYQVLAPVSHEAHGSNTAW
Ga0194131_100005849F006450AGGAGMATTSPVVLERIDHGVLPSNDLGRAFRFWGNFMGGRIGHLTNLNWRGLNREVPMMLFMTVANHPGFGVSLQDVRLSPKPARMMEGVVWGFEVAGDNLSAAYEVADKQNLNPHRVTDYPSSSSPIKESLSVLDPDGNTIELCIMKEPSTIEPQVGLVPLRRISHVRVEVTDLNLARTWYSDTFGLIEGAQVPGEGQITLTVPKSGQLIILHKVVKVADRSTQCYRGPHIDLRSNAETYPGMLKRFNRKEQYWGPDPNLIPWHEPDTNTAYGYDPFDNRIQIGVFAQRPFHTGVIKRFQNQQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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