NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181604_10219468

Scaffold Ga0181604_10219468


Overview

Basic Information
Taxon OID3300020191 Open in IMG/M
Scaffold IDGa0181604_10219468 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001166Metagenome / Metatranscriptome760Y
F019641Metagenome / Metatranscriptome228N
F034161Metagenome / Metatranscriptome175N

Sequences

Protein IDFamilyRBSSequence
Ga0181604_102194681F019641GAGGMGELLMLFITGGGSTAMGAILKGVFGYIFEAKQNKHDLELARESRTNDNFLRLQAELAKSGTGEFVSFTRRILAVIGVSTLCACIILCTLFPTAEIVTLTNA
Ga0181604_102194682F001166AGGMIKNMATELGENVQVKANLAFMAKVIAIVGTCVWGYSVVWNKLMVLDSSLDRVQHEGTLLGDLSARMMHLEKFAEQSKADLNHLLEMQDAPITSDHQQFERIRYLEKEVDRLRAKFDNMMYIAR
Ga0181604_102194683F034161N/ATQGAVAGTSTMPFKSMQELARAQSDPRYKSGDKAYHEEIDRRLLVSKI
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