NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10077567

Scaffold Ga0206131_10077567


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10077567 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F072209Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_100775671F072209AGGMASRTLSLTDSTQLLLKGDSRNLTPQNAWEEGTNIRTALRLNPQMVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHAGTREERKAIL
Ga0206131_100775672F009856N/AMKYWFEVEDAQRWGLPAAAVLAHLKYWIARNTEAGEEPCMTQSIARMQGHLPFLTFDQIRRALSKLEKADAIYRKSNGFDRRHTYCLAELPQASGEIATTKRQDCHIEESELPRVHIETNTSKRTRDNAREELEYERPTEEEVIEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPTGFTPDGLKDFIANG
Ga0206131_100775673F048232GAGMDGRIIRWMSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKNKLRLEIARVQKALKELDPDGMFPP
Ga0206131_100775675F036970N/AYMRIFCIYPNLFPIFAQIKHNTMTKYKRWVTAVNRAIVAEMAMQKKTQKDLADALSIHPVTINRKLKDPGLFFVGELGLLCDTLNIDLKNPPNYGTGAN
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