NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206131_10027751

Scaffold Ga0206131_10027751


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10027751 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4376
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014147Metagenome / Metatranscriptome265N
F051922Metagenome / Metatranscriptome143N
F070126Metagenome / Metatranscriptome123N
F080086Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_100277512F070126AGGMNLTELYTYCREVIEKYPELRNDVMRHFALAEMECEDDCSSEEHECELSFTDINDLIADHEMQMGLQK
Ga0206131_100277515F080086N/AMTNITAIEVSIEALEKECRAHDFKFMENPWRHRHWFNEYDRRAKIFTLLERLGHSSKAIEVYNTYAPDFAKRPLSSSYY
Ga0206131_100277516F014147N/AMTTIKNTFERQLHEKFGVNVQSLDGTSSAILVDGTHGTDYISYHDTSPDWVFGIHPKLQAFIDAHGWECEWRNSEVLDLHPGHDWTSDFSEAQLVSYWNAMCDYITAPQDHVYANDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNDIYQYIDVPELEEYLIAHALI
Ga0206131_100277517F051922N/AMRTTLYSRLKPDVRARLEANQLDYEFTVGAVIAKLDSSLFWDELTVRDISNLVVFSDSDMPATTSTMLYGDTNLIEPQNEVI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.